Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5196

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13563 and 13564 are separated by 434 nucleotides13564 and 13565 are separated by 117 nucleotides mRNA_5195: 13563 - KOG0814 Glyoxylase, at 125,333 to 126,456 13563 mRNA_5196: 13564 - K17218 sqr sulfide-quinone oxidoreductase, at 126,891 to 128,997 13564 mRNA_5197: 13565 - Hypothetical Protein, at 129,115 to 130,730 13565

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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125,957 - 13563 mRNA_5195 0.56 +1.0
126,343 + 13563 mRNA_5195 0.90 -0.1
126,364 + +0.5
126,411 - -1.1
126,498 - -1.2
126,511 + -0.2
126,518 - +0.7
126,524 - -1.1
126,532 + +0.0
126,540 + -1.2
126,540 + -0.4
126,668 + -0.2
126,684 - +0.6
126,695 + +2.2
126,697 + +0.4
126,704 + -2.5
126,711 - -0.1
126,810 - -0.7
126,816 - +0.1
126,817 + +0.6
126,839 + -2.7
126,924 + +1.6
127,006 + -0.5
127,171 + 13564 mRNA_5196 0.13 +0.3
127,303 + 13564 mRNA_5196 0.20 -0.5
127,305 - 13564 mRNA_5196 0.20 +1.0
127,430 + 13564 mRNA_5196 0.26 +1.7
127,443 + 13564 mRNA_5196 0.26 -0.6
127,443 - 13564 mRNA_5196 0.26 -0.1
127,464 + 13564 mRNA_5196 0.27 -0.6
127,469 + 13564 mRNA_5196 0.27 -0.5
127,477 - 13564 mRNA_5196 0.28 -0.4
127,535 + 13564 mRNA_5196 0.31 +0.6
127,593 - 13564 mRNA_5196 0.33 +0.3
127,603 + 13564 mRNA_5196 0.34 +0.5
127,720 - 13564 mRNA_5196 0.39 +0.5
127,757 - 13564 mRNA_5196 0.41 +0.8
127,772 + 13564 mRNA_5196 0.42 -0.3
127,781 + 13564 mRNA_5196 0.42 -1.3
127,838 - 13564 mRNA_5196 0.45 -0.4
127,852 - 13564 mRNA_5196 0.46 +0.4
127,859 + 13564 mRNA_5196 0.46 -1.5
127,892 + 13564 mRNA_5196 0.48 -1.3
127,892 + 13564 mRNA_5196 0.48 -1.0
127,901 - 13564 mRNA_5196 0.48 +0.9
127,924 + 13564 mRNA_5196 0.49 -0.0
127,928 + 13564 mRNA_5196 0.49 +0.3
127,930 - 13564 mRNA_5196 0.49 +0.1
127,971 - 13564 mRNA_5196 0.51 -1.5
127,988 - 13564 mRNA_5196 0.52 +0.2
127,989 + 13564 mRNA_5196 0.52 -0.0
128,002 + 13564 mRNA_5196 0.53 +0.3
128,018 + 13564 mRNA_5196 0.53 -1.2
128,044 + 13564 mRNA_5196 0.55 -0.6
128,112 + 13564 mRNA_5196 0.58 -0.8
128,126 - 13564 mRNA_5196 0.59 +0.4
128,134 + 13564 mRNA_5196 0.59 +0.5
128,233 - 13564 mRNA_5196 0.64 -1.3
128,280 - 13564 mRNA_5196 0.66 +2.0
128,286 - 13564 mRNA_5196 0.66 +2.4
128,289 + 13564 mRNA_5196 0.66 +2.3
128,292 + 13564 mRNA_5196 0.66 -0.6
128,292 - 13564 mRNA_5196 0.66 -0.0
128,293 + 13564 mRNA_5196 0.67 -1.6
128,321 - 13564 mRNA_5196 0.68 -1.3
128,327 - 13564 mRNA_5196 0.68 -0.4
128,468 + 13564 mRNA_5196 0.75 -1.3
128,497 - 13564 mRNA_5196 0.76 +2.0
128,593 + 13564 mRNA_5196 0.81 +1.0
128,766 - 13564 mRNA_5196 0.89 -1.0
128,861 - -0.6
128,919 + +1.2
129,038 - +0.2
129,055 + +0.1
129,145 - +0.3
129,167 - +0.4
129,189 - +0.4
129,234 - +0.6
129,300 - 13565 mRNA_5197 0.11 +0.0
129,366 - 13565 mRNA_5197 0.16 +0.3
129,391 - 13565 mRNA_5197 0.17 +1.2
129,648 - 13565 mRNA_5197 0.33 -0.3
129,660 + 13565 mRNA_5197 0.34 -0.3
129,797 - 13565 mRNA_5197 0.42 -0.2
129,812 + 13565 mRNA_5197 0.43 +0.7
129,813 - 13565 mRNA_5197 0.43 -0.7
129,900 + 13565 mRNA_5197 0.49 -0.0
129,966 + 13565 mRNA_5197 0.53 +1.1

Or see this region's nucleotide sequence