Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5221

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13589 and 13590 are separated by 265 nucleotides mRNA_5221: 13589 - HMMPfam-Cellulase (glycosyl hydrolase family 5)-PF00150,SUPERFAMILY--SSF51445, at 184,059 to 187,472 13589 mRNA_5222: 13590 - Hypothetical Protein, at 187,738 to 188,641 13590

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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183,061 + +0.9
183,064 - -1.2
183,069 + +0.1
183,070 + -1.2
183,080 + +0.3
183,093 + -0.3
183,142 + +0.4
183,163 + -0.2
183,198 - +0.4
183,218 + +0.2
183,280 - +1.1
183,316 + +0.7
183,336 - +0.0
183,345 - -0.0
183,454 - +0.8
183,477 - +0.0
183,543 + -1.3
183,786 + +0.4
183,909 + -1.7
183,914 - -0.4
183,916 - +0.1
183,924 - +0.1
183,925 + -0.7
183,939 + +0.2
183,943 + +0.8
184,069 - +0.3
184,086 + +1.1
184,313 + +0.8
184,473 - 13589 mRNA_5221 0.12 -3.3
184,482 + 13589 mRNA_5221 0.12 -0.8
184,519 - 13589 mRNA_5221 0.13 +0.6
184,522 - 13589 mRNA_5221 0.14 -1.5
184,524 - 13589 mRNA_5221 0.14 +0.5
184,528 + 13589 mRNA_5221 0.14 +1.4
184,933 + 13589 mRNA_5221 0.26 +1.7
185,082 + 13589 mRNA_5221 0.30 -3.6
185,362 + 13589 mRNA_5221 0.38 +1.8
185,385 - 13589 mRNA_5221 0.39 +0.4
185,656 + 13589 mRNA_5221 0.47 +1.2
185,688 - 13589 mRNA_5221 0.48 -0.8
185,692 + 13589 mRNA_5221 0.48 -0.3
185,716 + 13589 mRNA_5221 0.49 +0.8
185,807 + 13589 mRNA_5221 0.51 +0.3
185,832 - 13589 mRNA_5221 0.52 -2.1
185,853 - 13589 mRNA_5221 0.53 -0.8
185,934 + 13589 mRNA_5221 0.55 +1.9
186,000 - 13589 mRNA_5221 0.57 -0.4
186,102 - 13589 mRNA_5221 0.60 +0.9
186,270 - 13589 mRNA_5221 0.65 -0.2
186,400 + 13589 mRNA_5221 0.69 +2.4
186,403 - 13589 mRNA_5221 0.69 -1.5
186,523 + 13589 mRNA_5221 0.72 -0.2
186,525 - 13589 mRNA_5221 0.72 -1.0
186,586 - 13589 mRNA_5221 0.74 +1.2
186,717 - 13589 mRNA_5221 0.78 -1.4
187,013 + 13589 mRNA_5221 0.87 +0.7
187,395 - -1.8
187,538 + +0.8
187,561 + -1.1
187,569 + +0.0
187,712 + -1.1
187,739 + +0.5
187,822 + +2.1
188,021 - 13590 mRNA_5222 0.31 -0.4
188,189 + 13590 mRNA_5222 0.50 -2.4
188,435 + 13590 mRNA_5222 0.77 -1.2

Or see this region's nucleotide sequence