Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5231

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13598 and 13599 are separated by 506 nucleotides13599 and 13600 are separated by 512 nucleotides mRNA_5230: 13598 - K17906 ATG2 autophagy-related protein 2, at 209,416 to 215,994 13598 mRNA_5231: 13599 - Hypothetical Protein, at 216,501 to 218,178 13599 mRNA_5232: 13600 - SUPERFAMILY--SSF52047, at 218,691 to 220,745 13600

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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215,573 + -1.9
215,649 + -1.1
215,652 - -0.2
215,807 + -1.1
215,920 + +0.4
215,947 + +0.9
215,952 - -0.0
215,976 + +0.6
216,104 - -0.1
216,216 - -0.8
216,296 + +0.6
216,375 - -0.9
216,378 + -0.7
216,423 + -0.1
216,429 - +1.0
216,579 + -0.5
216,673 + 13599 mRNA_5231 0.10 -0.4
216,705 - 13599 mRNA_5231 0.12 -0.3
216,812 + 13599 mRNA_5231 0.19 -1.1
217,099 - 13599 mRNA_5231 0.36 -0.1
217,264 - 13599 mRNA_5231 0.45 +0.4
217,278 - 13599 mRNA_5231 0.46 -1.0
217,425 - 13599 mRNA_5231 0.55 -0.4
217,716 - 13599 mRNA_5231 0.72 -0.2
217,723 - 13599 mRNA_5231 0.73 +0.5
217,739 + 13599 mRNA_5231 0.74 -1.0
217,845 - 13599 mRNA_5231 0.80 -0.2
217,861 - 13599 mRNA_5231 0.81 -0.5
217,877 + 13599 mRNA_5231 0.82 +0.3
217,896 - 13599 mRNA_5231 0.83 +0.2
218,022 - -0.4
218,024 + -1.0
218,030 - +0.4
218,030 - -2.3
218,031 - +0.3
218,045 - -0.4
218,046 + -0.9
218,054 - +0.0
218,054 - -0.7
218,055 + +0.7
218,055 + -0.7
218,059 + +1.2
218,062 - -0.2
218,063 - +0.2
218,064 + -0.0
218,066 - -0.6
218,068 + +0.8
218,072 - +0.2
218,074 + -0.6
218,074 - +0.4
218,080 + -0.0
218,093 + -0.2
218,096 + +0.8
218,099 - -1.0
218,105 - +0.6
218,120 + -0.5
218,128 - +1.1
218,133 - -1.0
218,142 - +0.3
218,147 + -1.0
218,158 - +1.8
218,160 + -1.1
218,160 + -1.2
218,162 + +0.4
218,164 + +1.0
218,165 + +0.5
218,165 - +0.6
218,166 + +0.5
218,218 - -0.1
218,220 - +0.3
218,245 + +0.4
218,247 + +0.8
218,263 + -0.1
218,294 + +0.4
218,295 - -1.7
218,324 - -0.6
218,328 - -0.2
218,334 - -0.3
218,334 + +0.7
218,337 - +1.2
218,338 - -1.5
218,339 + -1.8
218,341 + +0.0
218,411 + -2.5
218,411 + -0.7
218,505 - +1.2
218,510 - -0.6
218,641 + +0.6
218,658 - -1.2
218,659 - +0.2
218,659 + -0.2
218,933 + 13600 mRNA_5232 0.12 -0.2
218,936 + 13600 mRNA_5232 0.12 +0.7
218,937 - 13600 mRNA_5232 0.12 +1.4
219,076 + 13600 mRNA_5232 0.19 +0.5
219,080 - 13600 mRNA_5232 0.19 +0.2

Or see this region's nucleotide sequence