Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5237

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13604 and 13605 are separated by 311 nucleotides13605 and 13606 are separated by 538 nucleotides mRNA_5236: 13604 - KOG2031 Tyrosyl-DNA phosphodiesterase, at 232,008 to 233,871 13604 mRNA_5237: 13605 - K02914 RP-L34, MRPL34, rpmH large subunit ribosomal protein L34, at 234,183 to 234,602 13605 mRNA_5238: 13606 - KOG1199 Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase, at 235,141 to 236,473 13606

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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233,220 - 13604 mRNA_5236 0.65 +1.3
233,664 + 13604 mRNA_5236 0.89 -0.5
233,693 + +0.5
233,814 - +0.5
233,883 - +0.2
233,942 + -0.2
233,954 + -0.5
234,099 - +2.0
234,100 + +0.5
234,113 - +0.2
234,116 + +1.2
234,781 + +0.7
234,821 - +0.9
234,822 - +0.5
235,389 - 13606 mRNA_5238 0.19 +0.8
235,564 + 13606 mRNA_5238 0.32 +3.2

Or see this region's nucleotide sequence