Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5255

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13622 and 13623 are separated by 289 nucleotides mRNA_5254: 13622 - HMMPfam-10 TM Acyl Transferase domain found in Cas1p-PF07779,HMMPfam-GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p-PF13839, at 280,539 to 283,748 13622 mRNA_5255: 13623 - K12604 CNOT1, NOT1 CCR4-NOT transcription complex subunit 1, at 284,038 to 290,339 13623

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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283,403 + 13622 mRNA_5254 0.89 +2.3
283,680 + +1.0
283,815 - +1.2
283,825 - -1.9
283,826 - -0.5
283,829 + -0.7
283,850 - -0.3
283,855 + -0.1
283,856 - +0.3
283,856 - +0.8
283,857 - -0.4
283,967 - +0.3
283,977 + +0.7
284,133 + +1.8
288,283 + 13623 mRNA_5255 0.67 -2.0
289,960 + -0.4
290,149 - -0.8
290,395 - +0.3
290,411 + +0.6
290,538 - -0.3
290,558 + -0.8
290,842 + +0.5
290,982 - +0.1
290,982 - -0.2

Or see this region's nucleotide sequence