Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5268

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13635 and 13636 are separated by 748 nucleotides13636 and 13637 are separated by 605 nucleotides mRNA_5267: 13635 - KOG2504 Monocarboxylate transporter, at 317,317 to 318,833 13635 mRNA_5268: 13636 - K10389 TUBG tubulin gamma, at 319,582 to 321,853 13636 mRNA_5269: 13637 - K03320 amt, AMT, MEP ammonium transporter, Amt family, at 322,459 to 324,944 13637

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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318,623 - 13635 mRNA_5267 0.86 -0.1
319,222 - +0.8
319,233 + -0.3
319,372 + +0.3
319,377 + -0.1
319,383 + +2.0
319,510 - +1.8
319,517 + +1.0
319,518 + +0.6
319,518 - -0.3
321,861 - -0.6
322,020 + -0.1
322,172 + +0.9
322,177 + -0.1
322,208 - -4.9
322,212 - -0.6
322,213 - -0.2
322,217 - +0.6
322,221 + -0.8
322,221 + -0.2
322,222 + -0.4
322,222 - -0.1
322,222 + -1.4
322,232 + +0.8
322,243 + -0.0
322,254 + -0.4
322,361 - -0.7
322,377 - +1.9
322,407 + +0.7
322,525 - -0.2
322,533 - -0.6
322,656 + -2.4
322,836 + 13637 mRNA_5269 0.15 +1.1

Or see this region's nucleotide sequence