Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5269

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13636 and 13637 are separated by 605 nucleotides mRNA_5268: 13636 - K10389 TUBG tubulin gamma, at 319,582 to 321,853 13636 mRNA_5269: 13637 - K03320 amt, AMT, MEP ammonium transporter, Amt family, at 322,459 to 324,944 13637

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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321,861 - -0.6
322,020 + -0.1
322,172 + +0.9
322,177 + -0.1
322,208 - -4.9
322,212 - -0.6
322,213 - -0.2
322,217 - +0.6
322,221 + -0.8
322,221 + -0.2
322,222 + -0.4
322,222 - -0.1
322,222 + -1.4
322,232 + +0.8
322,243 + -0.0
322,254 + -0.4
322,361 - -0.7
322,377 - +1.9
322,407 + +0.7
322,525 - -0.2
322,533 - -0.6
322,656 + -2.4
322,836 + 13637 mRNA_5269 0.15 +1.1
322,980 + 13637 mRNA_5269 0.21 +0.6
322,992 - 13637 mRNA_5269 0.21 +1.3
323,003 - 13637 mRNA_5269 0.22 +2.1
323,010 + 13637 mRNA_5269 0.22 +0.1
323,120 + 13637 mRNA_5269 0.27 +0.2
323,417 + 13637 mRNA_5269 0.39 -0.2
323,429 + 13637 mRNA_5269 0.39 -0.7
323,559 + 13637 mRNA_5269 0.44 +0.1
323,688 + 13637 mRNA_5269 0.49 -0.3
324,146 - 13637 mRNA_5269 0.68 -0.7
324,749 + +2.0
325,073 + +0.6
325,359 + +1.0
325,477 - +0.0
325,479 - +0.2
325,490 - +0.9
325,506 + +0.5
325,543 + -1.3
325,768 + +1.2

Or see this region's nucleotide sequence