Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5284

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13652 and 13653 are separated by 718 nucleotides mRNA_5284: 13652 - Hypothetical Protein, at 356,424 to 357,463 13652 mRNA_5285: 13653 - HMMPfam-FAD binding domain-PF01494,PRINTS-Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature-PR00420,SUPERFAMILY--SSF51905, at 358,182 to 359,480 13653

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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355,621 - +0.6
355,748 - +0.4
355,759 - -1.4
355,761 + -0.2
355,872 - +0.8
356,174 + -0.9
356,204 + +0.1
356,342 + +1.0
356,342 + +0.8
356,356 + +1.0
356,497 - +0.3
356,656 - 13652 mRNA_5284 0.22 +1.2
357,003 + 13652 mRNA_5284 0.56 -0.7
357,068 + 13652 mRNA_5284 0.62 +0.8
357,097 - 13652 mRNA_5284 0.65 -2.9
357,524 - -2.0
357,527 + +0.7
357,573 - -0.4
357,681 - +0.9
357,692 + -0.3
357,830 - -1.8
357,844 + -0.2
357,976 + -1.5
358,113 + +0.7
358,130 - -0.0
358,243 - +0.8
358,270 - +0.3
358,318 + 13653 mRNA_5285 0.10 -0.4
358,442 + 13653 mRNA_5285 0.20 -0.7

Or see this region's nucleotide sequence