Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5317

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13684 and 13685 are separated by 242 nucleotides13685 and 13686 are separated by 82 nucleotides mRNA_5316: 13684 - Hypothetical Protein, at 440,018 to 441,628 13684 mRNA_5317: 13685 - K17498 SPN1, IWS1 transcription factor SPN1, at 441,871 to 444,778 13685 mRNA_5318: 13686 - KOG4315 G-patch nucleic acid binding protein, at 444,861 to 446,150 13686

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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441,095 - 13684 mRNA_5316 0.67 -0.3
441,107 + 13684 mRNA_5316 0.68 -1.4
441,203 - 13684 mRNA_5316 0.74 +1.3
441,234 - 13684 mRNA_5316 0.75 +1.9
441,321 - 13684 mRNA_5316 0.81 +0.5
441,429 + 13684 mRNA_5316 0.88 +1.4
441,548 - -0.6
441,551 + +1.2
441,554 - -1.1
441,750 + -0.9
441,967 + +3.4
442,128 + +1.4
442,146 + -0.8
442,289 - 13685 mRNA_5317 0.14 -1.7
442,296 - 13685 mRNA_5317 0.15 +0.1
442,578 - 13685 mRNA_5317 0.24 -1.7
442,618 + 13685 mRNA_5317 0.26 +1.3
442,734 + 13685 mRNA_5317 0.30 +0.5
442,748 - 13685 mRNA_5317 0.30 -0.5
442,750 + 13685 mRNA_5317 0.30 -2.3
442,751 - 13685 mRNA_5317 0.30 -0.6
442,757 + 13685 mRNA_5317 0.30 +0.9
442,871 - 13685 mRNA_5317 0.34 +0.6
443,150 - 13685 mRNA_5317 0.44 -0.4
443,152 - 13685 mRNA_5317 0.44 +0.1
443,211 + 13685 mRNA_5317 0.46 -1.2
444,765 - -0.1
445,052 - 13686 mRNA_5318 0.15 -1.7

Or see this region's nucleotide sequence