Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5357

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13724 and 13725 are separated by 153 nucleotides13725 and 13726 are separated by 307 nucleotides mRNA_5356: 13724 - K07748 E1.1.1.170, NSDHL, ERG26 sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating), at 531,177 to 533,794 13724 mRNA_5357: 13725 - HMMPfam-Methyltransferase domain-PF12847,SUPERFAMILY--SSF53335, at 533,948 to 534,977 13725 mRNA_5358: 13726 - Hypothetical Protein, at 535,285 to 536,423 13726

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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533,038 - 13724 mRNA_5356 0.71 +2.2
533,048 + 13724 mRNA_5356 0.71 -0.5
533,132 - 13724 mRNA_5356 0.75 +1.0
533,218 + 13724 mRNA_5356 0.78 +0.2
533,229 - 13724 mRNA_5356 0.78 +1.4
533,236 - 13724 mRNA_5356 0.79 -1.2
533,240 + 13724 mRNA_5356 0.79 -0.9
533,364 - 13724 mRNA_5356 0.84 -0.7
533,565 + -1.6
533,565 - -1.6
533,648 - -0.3
533,651 - +0.5
533,676 - -0.3
533,833 + -1.5
533,954 - -2.2
534,377 + 13725 mRNA_5357 0.42 +0.3
534,442 + 13725 mRNA_5357 0.48 -0.1
534,554 + 13725 mRNA_5357 0.59 -0.2
534,670 - 13725 mRNA_5357 0.70 -0.1
534,688 + 13725 mRNA_5357 0.72 +0.3
534,821 + 13725 mRNA_5357 0.85 -1.2
534,866 - 13725 mRNA_5357 0.89 +1.2
534,967 - -0.2
534,975 + +0.2
535,010 + -1.5
535,074 + -0.4
535,090 - -0.4
535,091 + +0.4
535,127 - +1.4
535,135 - +1.0
535,141 + +0.6
535,153 + +1.2
535,176 - -0.7
535,189 + +0.1

Or see this region's nucleotide sequence