Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5383

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_5383: 13751 - Hypothetical Protein, at 612,955 to 613,540 13751

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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612,092 - +0.2
612,289 - +1.1
612,330 - -0.7
612,337 + +0.1
612,437 + +1.2
612,534 + +0.2
612,594 - -0.0
612,617 + +0.9
612,720 - +0.6
612,723 + -0.7
612,723 + +0.7
612,732 + -0.6
612,864 + +0.4
612,873 + +0.4
612,874 - -0.2
612,893 + +0.4
612,899 - +1.0
612,900 + -0.0
612,900 + +2.0
613,033 - 13751 mRNA_5383 0.13 -0.4
613,090 + 13751 mRNA_5383 0.23 -0.8
613,144 - 13751 mRNA_5383 0.32 -0.1
613,169 - 13751 mRNA_5383 0.37 -0.3
613,208 + 13751 mRNA_5383 0.43 +0.4
613,213 + 13751 mRNA_5383 0.44 +1.2
613,275 - 13751 mRNA_5383 0.55 +1.0
613,318 - 13751 mRNA_5383 0.62 +0.6
613,322 + 13751 mRNA_5383 0.63 -0.4
613,395 + 13751 mRNA_5383 0.75 +1.3
613,396 + 13751 mRNA_5383 0.75 -0.2
613,409 + 13751 mRNA_5383 0.77 +1.3
613,419 + 13751 mRNA_5383 0.79 -0.3
613,421 + 13751 mRNA_5383 0.80 -1.1
613,468 - 13751 mRNA_5383 0.88 +0.1
613,478 + 13751 mRNA_5383 0.89 +0.1
613,484 - +2.4
613,494 + -0.1
613,506 + -2.0
613,510 + +0.1
613,513 - -1.2
613,513 + +0.1
613,530 + +0.2
613,533 + +0.8
613,614 - +0.4
613,638 + +0.2
613,638 - -1.1
613,641 - +0.4
613,693 - +1.0
613,700 - +2.0
613,873 + +0.6
613,883 - +1.5
613,902 - -0.6
614,024 - -0.1
614,117 + -0.3
614,135 - -0.8
614,386 - -0.4

Or see this region's nucleotide sequence