Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5394

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13762 and 13763 are separated by 73 nucleotides mRNA_5394: 13762 - SUPERFAMILY--SSF54897, at 121 to 1,074 13762 mRNA_5395: 13763 - KOG4551 GPI-GlcNAc transferase complex, PIG-H component, involved in glycosylphosphatidylinositol anchor biosynthesis, at 1,148 to 1,997 13763

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1 + -0.2
1 + +0.2
1 + +0.4
1 + -1.1
23 + -0.1
29 + +0.7
29 + +1.2
34 + -1.1
39 + -1.0
39 + +0.2
47 + +0.6
50 + +0.2
50 + -0.8
50 + -4.1
50 + -0.3
50 - -1.7
51 + +0.7
61 + -0.4
62 + +0.0
96 + +0.3
116 + -0.5
158 - -2.2
159 - -0.3
160 - +0.9
169 - -0.4
180 - -0.9
189 + -0.8
198 + +0.4
201 - +1.7
208 - +0.6
210 + -0.5
225 + 13762 mRNA_5394 0.11 -1.1
225 + 13762 mRNA_5394 0.11 +2.3
244 + 13762 mRNA_5394 0.13 -2.8
245 - 13762 mRNA_5394 0.13 +0.2
271 - 13762 mRNA_5394 0.16 +1.3
276 - 13762 mRNA_5394 0.16 -3.8
277 + 13762 mRNA_5394 0.16 +0.8
280 - 13762 mRNA_5394 0.17 +0.1
306 + 13762 mRNA_5394 0.19 +0.2
317 - 13762 mRNA_5394 0.21 -1.6
345 + 13762 mRNA_5394 0.23 -3.4
345 - 13762 mRNA_5394 0.23 -2.3
347 + 13762 mRNA_5394 0.24 +0.7
359 - 13762 mRNA_5394 0.25 +1.7
387 - 13762 mRNA_5394 0.28 -1.1
399 + 13762 mRNA_5394 0.29 -0.0
434 + 13762 mRNA_5394 0.33 +1.2
447 - 13762 mRNA_5394 0.34 +0.4
485 - 13762 mRNA_5394 0.38 +0.0
543 + 13762 mRNA_5394 0.44 -0.0
649 + 13762 mRNA_5394 0.55 +1.1
667 + 13762 mRNA_5394 0.57 +0.4
667 - 13762 mRNA_5394 0.57 +0.1
678 - 13762 mRNA_5394 0.58 -1.8
718 + 13762 mRNA_5394 0.63 +1.1
723 + 13762 mRNA_5394 0.63 +2.0
802 + 13762 mRNA_5394 0.71 +0.8
806 + 13762 mRNA_5394 0.72 -1.3
905 - 13762 mRNA_5394 0.82 +0.2
911 + 13762 mRNA_5394 0.83 +1.3
965 + 13762 mRNA_5394 0.88 -3.2
966 + 13762 mRNA_5394 0.89 -0.3
968 + 13762 mRNA_5394 0.89 +2.1
1,014 - -1.1
1,084 - +1.7
1,103 - +0.2
1,110 + -0.5
1,245 - 13763 mRNA_5395 0.11 -0.3
1,260 - 13763 mRNA_5395 0.13 -0.4
1,376 - 13763 mRNA_5395 0.27 -0.1
1,438 + 13763 mRNA_5395 0.34 -0.3
1,438 + 13763 mRNA_5395 0.34 +0.2
1,438 + 13763 mRNA_5395 0.34 +0.5
1,523 + 13763 mRNA_5395 0.44 -0.3
1,528 - 13763 mRNA_5395 0.45 +0.4
1,533 + 13763 mRNA_5395 0.45 +0.2
1,538 + 13763 mRNA_5395 0.46 +1.4
1,538 - 13763 mRNA_5395 0.46 +0.6
1,556 + 13763 mRNA_5395 0.48 +1.4
1,639 + 13763 mRNA_5395 0.58 +0.3
1,854 - 13763 mRNA_5395 0.83 -0.3
1,855 - 13763 mRNA_5395 0.83 +0.0
1,887 - 13763 mRNA_5395 0.87 +1.6
1,908 - 13763 mRNA_5395 0.89 +0.3
2,000 - -0.0
2,009 + +0.5

Or see this region's nucleotide sequence