Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5409

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13777 and 13778 are separated by 993 nucleotides mRNA_5409: 13777 - Hypothetical Protein, at 32,747 to 36,067 13777 mRNA_5410: 13778 - KOG2952 Cell cycle control protein, at 37,061 to 38,634 13778

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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31,749 + +0.9
31,751 - +1.9
31,845 + +0.3
31,873 - -1.1
31,884 + -4.4
31,945 - +1.9
32,038 + +0.5
32,043 + -0.2
32,224 + +1.1
32,334 + +0.2
32,346 - -2.1
32,369 + +0.4
32,369 + +1.2
32,499 - -0.5
32,612 - +1.0
32,618 + +0.4
32,633 + +0.5
32,759 - -0.1
32,766 + -1.7
32,768 + -0.5
32,883 + -1.5
32,926 + -0.5
33,060 - +0.0
33,073 - +0.5
33,382 + 13777 mRNA_5409 0.19 +0.2
33,769 + 13777 mRNA_5409 0.31 +1.9
33,916 - 13777 mRNA_5409 0.35 +0.7
33,929 - 13777 mRNA_5409 0.36 +2.2
33,951 - 13777 mRNA_5409 0.36 -0.1
33,954 - 13777 mRNA_5409 0.36 -2.0
34,061 - 13777 mRNA_5409 0.40 -0.0
34,202 - 13777 mRNA_5409 0.44 +0.9
34,202 - 13777 mRNA_5409 0.44 +0.2
34,247 + 13777 mRNA_5409 0.45 +0.3
34,459 - 13777 mRNA_5409 0.52 +0.9
34,472 - 13777 mRNA_5409 0.52 -1.0
34,935 + 13777 mRNA_5409 0.66 -1.0
35,096 - 13777 mRNA_5409 0.71 +1.2
35,256 + 13777 mRNA_5409 0.76 -0.7
35,710 - 13777 mRNA_5409 0.89 +1.4
35,712 + 13777 mRNA_5409 0.89 +1.4
35,805 + -1.6
35,819 - -0.7
35,967 - +0.3
35,967 - +1.3
35,973 - +1.1
35,973 - +0.0
35,979 - +0.1
35,986 + -0.4
35,989 + +0.1
36,104 - -0.3
36,105 + +1.1
36,114 + -0.6
36,116 - +1.6
36,123 + -2.3
36,123 - -0.3
36,127 - +0.0
36,134 + +0.6
36,139 - -1.5
36,146 + +0.3
36,253 - +0.3
36,270 + -0.7
36,410 - +0.5
36,415 + +0.9
36,461 - -0.2
36,529 - -0.2
36,550 - +0.4
36,742 - +1.6
36,863 - +2.2
36,890 + -1.4
37,014 - +0.3
37,018 + +0.2
37,025 - +0.3
37,028 + +2.1
37,028 - +0.8
37,029 + +2.4
37,043 + +2.7

Or see this region's nucleotide sequence