Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5534

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13901 and 13902 are separated by 197 nucleotides13902 and 13903 are separated by 364 nucleotides mRNA_5533: 13901 - Hypothetical Protein, at 314,025 to 315,738 13901 mRNA_5534: 13902 - K18798 AFG1, LACE1 peroxisome-assembly ATPase, at 315,936 to 317,983 13902 mRNA_5535: 13903 - K15305 VAC14, TAX1BP2 vacuole morphology and inheritance protein 14, at 318,348 to 322,384 13903

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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315,832 + -0.1
315,836 + -0.6
315,843 + +1.3
315,973 - +0.5
316,083 - -1.8
316,107 + +0.8
316,119 - +0.4
316,121 + +0.6
316,550 + 13902 mRNA_5534 0.30 -0.4
316,830 + 13902 mRNA_5534 0.44 +0.3
317,116 - 13902 mRNA_5534 0.58 -0.2
317,237 - 13902 mRNA_5534 0.64 -2.4
317,258 + 13902 mRNA_5534 0.65 -0.5
317,302 + 13902 mRNA_5534 0.67 -0.4
317,541 + 13902 mRNA_5534 0.78 -1.8
317,550 - 13902 mRNA_5534 0.79 +1.3
317,558 + 13902 mRNA_5534 0.79 -0.3
317,562 + 13902 mRNA_5534 0.79 -1.6
317,699 + 13902 mRNA_5534 0.86 -0.8
317,722 - 13902 mRNA_5534 0.87 -0.5
317,741 - 13902 mRNA_5534 0.88 -0.0
317,855 + -0.8
318,012 + +1.1
318,028 - -0.2
318,029 + -0.3
318,033 + +0.1
318,042 + -0.6
318,046 + -0.3
318,173 - +0.2
318,304 - +0.2
318,310 + -0.7
318,313 + -0.1
318,313 + +1.5
318,562 + +0.8

Or see this region's nucleotide sequence