Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5542

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13909 and 13910 are separated by 176 nucleotides13910 and 13911 are separated by 315 nucleotides mRNA_5541: 13909 - K02482 K02482 two-component system, NtrC family, sensor kinase, at 333,432 to 336,799 13909 mRNA_5542: 13910 - Hypothetical Protein, at 336,976 to 338,321 13910 mRNA_5543: 13911 - K15190 MEPCE, BCDIN3 7SK snRNA methylphosphate capping enzyme, at 338,637 to 339,590 13911

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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335,996 - 13909 mRNA_5541 0.76 -2.2
336,027 - 13909 mRNA_5541 0.77 +0.7
336,279 - 13909 mRNA_5541 0.85 +0.3
336,469 - +0.4
336,621 - -0.0
336,625 + +1.3
336,705 + -0.3
337,012 - +1.0
337,205 - 13910 mRNA_5542 0.17 -0.7
337,213 + 13910 mRNA_5542 0.18 +0.1
337,320 - 13910 mRNA_5542 0.26 +2.1
337,354 - 13910 mRNA_5542 0.28 -0.6
337,501 - 13910 mRNA_5542 0.39 -0.1
337,508 + 13910 mRNA_5542 0.40 +0.0
337,866 - 13910 mRNA_5542 0.66 +0.0
337,883 + 13910 mRNA_5542 0.67 +0.1
338,309 + +0.4
338,315 - +0.1
338,320 - -0.3
338,330 + +1.0
338,339 + -1.4
338,342 + +1.0
338,346 + -0.1
338,480 - +1.3
338,488 - +0.3
338,490 - -0.1
338,894 - 13911 mRNA_5543 0.27 +0.6
339,031 - 13911 mRNA_5543 0.41 +0.6
339,220 + 13911 mRNA_5543 0.61 +0.6

Or see this region's nucleotide sequence