Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5558

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13925 and 13926 are separated by 435 nucleotides13926 and 13927 are separated by 86 nucleotides mRNA_5557: 13925 - K09008 NDUFAF3 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3, at 375,495 to 376,430 13925 mRNA_5558: 13926 - KOG3328 HGG motif-containing thioesterase, at 376,866 to 377,685 13926 mRNA_5559: 13927 - KOG2406 MADS box transcription factor, at 377,772 to 380,881 13927

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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375,894 + 13925 mRNA_5557 0.43 -0.2
376,039 + 13925 mRNA_5557 0.58 -1.8
376,176 - 13925 mRNA_5557 0.73 -1.6
376,182 - 13925 mRNA_5557 0.73 -3.0
376,191 + 13925 mRNA_5557 0.74 -2.0
376,192 + 13925 mRNA_5557 0.74 -2.1
376,192 + 13925 mRNA_5557 0.74 -2.2
376,201 + 13925 mRNA_5557 0.75 -2.0
376,329 - 13925 mRNA_5557 0.89 -1.7
376,496 + -2.1
376,500 - -0.8
376,613 - -1.6
376,737 + -0.6
376,750 - -0.6
376,751 + -0.1
376,754 - -0.8
376,771 + -2.7
376,771 + +0.6
376,772 + +1.0
376,776 - +0.3
376,912 - -0.3
376,928 + +0.9
376,963 - 13926 mRNA_5558 0.12 +0.3
377,207 - 13926 mRNA_5558 0.42 +1.9
377,212 + 13926 mRNA_5558 0.42 +0.1
377,422 + 13926 mRNA_5558 0.68 -0.8
377,540 - 13926 mRNA_5558 0.82 +0.6

Or see this region's nucleotide sequence