Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5564

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13931 and 13932 are separated by 101 nucleotides mRNA_5563: 13931 - K10756 RFC3_5 replication factor C subunit 3/5, at 385,624 to 387,371 13931 mRNA_5564: 13932 - HMMPfam-Phytanoyl-CoA dioxygenase (PhyH)-PF05721,SUPERFAMILY--SSF51197, at 387,473 to 390,458 13932

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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387,517 + +0.1
387,517 - +0.4
387,622 + -1.2
387,951 - 13932 mRNA_5564 0.16 +0.3
388,072 - 13932 mRNA_5564 0.20 -0.6
388,402 - 13932 mRNA_5564 0.31 -0.7
388,457 + 13932 mRNA_5564 0.33 -1.4
388,476 - 13932 mRNA_5564 0.34 -2.3
388,622 + 13932 mRNA_5564 0.38 +0.5
388,809 - 13932 mRNA_5564 0.45 -1.5
388,856 + 13932 mRNA_5564 0.46 -0.4
388,937 - 13932 mRNA_5564 0.49 +0.5
389,009 + 13932 mRNA_5564 0.51 +0.6
389,301 + 13932 mRNA_5564 0.61 -0.0
389,550 - 13932 mRNA_5564 0.70 -0.0
389,606 - 13932 mRNA_5564 0.71 +0.6
389,824 + 13932 mRNA_5564 0.79 -0.8
389,873 + 13932 mRNA_5564 0.80 +0.6
390,281 - +0.7
390,607 - +0.9
390,768 - +1.6
391,031 + +0.1
391,042 - +0.3
391,195 + +1.1
391,195 + -0.4
391,305 + -0.6
391,306 + +1.3
391,319 - -0.1
391,326 + +0.9
391,328 - +1.1
391,343 - +1.1
391,381 - -0.1
391,401 + +0.0
391,401 + +1.3
391,419 - +0.3
391,420 - +0.5
391,438 + +1.6
391,447 - -0.7
391,454 - -0.4
391,454 - -0.1

Or see this region's nucleotide sequence