Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5567

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13934 and 13935 are separated by 127 nucleotides13935 and 13936 are separated by 341 nucleotides mRNA_5566: 13934 - Hypothetical Protein, at 393,012 to 395,471 13934 mRNA_5567: 13935 - K14394 ACP1 low molecular weight phosphotyrosine protein phosphatase, at 395,599 to 396,422 13935 mRNA_5568: 13936 - Hypothetical Protein, at 396,764 to 397,075 13936

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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394,821 - 13934 mRNA_5566 0.74 -1.5
394,849 + 13934 mRNA_5566 0.75 -0.8
395,212 - 13934 mRNA_5566 0.89 -0.3
395,307 - +0.6
395,313 + +1.1
395,575 + -0.4
395,624 - +0.1
395,742 + 13935 mRNA_5567 0.17 +0.1
395,762 + 13935 mRNA_5567 0.20 +2.4
395,866 - 13935 mRNA_5567 0.32 -1.1
396,022 - 13935 mRNA_5567 0.51 -0.4
396,281 - 13935 mRNA_5567 0.83 -0.9
396,289 - 13935 mRNA_5567 0.84 -1.0
396,444 + +0.3
396,444 - -0.1
396,461 - -1.8
396,468 - -0.0
396,473 - -0.2
396,476 - +0.5
396,486 + +0.8
396,505 - +2.0
396,507 + -0.3
396,521 - -0.3
396,619 - +0.6
396,781 + +0.1
396,782 + +0.7
396,927 - 13936 mRNA_5568 0.52 +1.5
397,169 - +2.2
397,209 + -0.4
397,220 - +0.3
397,324 - +0.6
397,343 - +0.6
397,346 + -1.8
397,347 + -0.2
397,371 - +1.3

Or see this region's nucleotide sequence