Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5573

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13940 and 13941 are separated by 367 nucleotides mRNA_5572: 13940 - K18730 GIGYF PERQ amino acid-rich with GYF domain-containing protein, at 405,680 to 409,565 13940 mRNA_5573: 13941 - BLAST Protein priA [Hypsizygus marmoreus], at 409,933 to 411,114 13941

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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409,527 + -2.2
409,575 - -2.6
409,590 + -0.3
409,598 - -1.7
409,614 + +0.1
409,614 + -0.2
409,617 - -0.8
409,624 + +0.4
409,670 - -0.9
409,696 - +0.5
409,717 - +0.5
409,730 + +0.0
409,755 - +0.2
409,834 - +0.8
409,863 - -0.6
409,939 + -0.9
410,023 + -0.6
410,040 + +0.2
410,115 + 13941 mRNA_5573 0.15 -1.1
410,306 + 13941 mRNA_5573 0.32 +0.6
410,323 + 13941 mRNA_5573 0.33 +1.5
410,562 + 13941 mRNA_5573 0.53 +1.5
410,580 + 13941 mRNA_5573 0.55 +0.1
410,769 + 13941 mRNA_5573 0.71 -0.4
410,799 + 13941 mRNA_5573 0.73 +0.6
410,808 + 13941 mRNA_5573 0.74 +1.8
410,828 - 13941 mRNA_5573 0.76 -0.3
410,852 - 13941 mRNA_5573 0.78 +0.6
410,865 + 13941 mRNA_5573 0.79 +0.5
410,988 + 13941 mRNA_5573 0.89 -0.4
411,001 - +0.3
411,007 + +0.0
411,010 + +0.2
411,036 + +0.4
411,059 - +0.9
411,130 - -0.7
411,136 + -0.3
411,149 - +0.8
411,173 - -0.6
411,180 + -0.8
411,185 + -0.5
411,198 + +0.4
411,198 + +0.3
411,220 - -2.0
411,264 - -0.4
411,269 + -0.1
411,271 + +0.8
411,282 + +0.1
411,288 - -0.2
411,293 + -1.2
411,296 - +0.7
411,307 + +0.6
411,310 - -0.5
411,311 - +0.6
411,312 + +0.3
411,315 + +0.6
411,316 - +0.3
411,317 + -0.9
411,317 + -0.0
411,318 + +1.0
411,319 - -0.3
411,319 + +0.8
411,322 - +0.4
411,328 - -1.2
411,337 - -0.8
411,337 + -0.6
411,338 + +1.0
411,345 - +0.9
411,364 - +1.3
411,368 - +1.4
411,374 - +0.1
411,383 - -0.9
411,388 - +1.0
411,395 + -0.9
411,412 + +0.3
411,416 + -3.1
411,424 - +1.0
411,427 - -0.6
411,433 + -2.0
411,438 - -0.6
411,449 - +0.5
411,453 + +0.1
411,455 - -0.8
411,458 - -1.2
411,465 - +0.8
411,466 - +0.5
411,475 + -1.8
411,482 + -0.3
411,489 - -0.6
411,496 - -1.4
411,503 + -0.3
411,504 - -0.4
411,524 - -0.4
411,531 + -1.3
411,541 - -0.9
411,555 - +1.1
411,569 + +1.0
411,570 - -2.1
411,588 - -0.2
411,600 - +1.0
411,619 + -0.4
411,621 - -1.0
411,646 - -0.4
411,651 - +0.1
411,652 - +0.3
411,652 - +0.2
411,657 + -0.5
411,659 + -0.3
411,659 - +0.5
411,661 - -0.4
411,662 - +0.8
411,663 - +0.6
411,663 - -1.2
411,663 + +1.8
411,666 + -0.8
411,672 + -0.0
411,679 + +0.3
411,683 - +0.9
411,684 + -0.5
411,685 + +0.9
411,685 + +0.4
411,685 - +0.2
411,687 - +0.9
411,690 + -1.0
411,692 + -0.5
411,693 + +0.6
411,697 - +0.5
411,702 + +0.5
411,702 - +0.3
411,703 + +0.4
411,707 + +0.4
411,707 + +0.1
411,711 + +0.2
411,715 + +2.1
411,716 + -1.2
411,723 + -0.9
411,727 - +0.2
411,727 + -2.0
411,729 - +0.2
411,742 - +1.3
411,746 - +0.7
411,751 - +0.9
411,754 - -0.8
411,755 + +0.5
411,756 + -0.8
411,761 + +0.5
411,765 - -0.9
411,773 - +0.4
411,774 + -0.9
411,774 + +0.4
411,775 + +0.5
411,775 + -0.2
411,776 + +0.3
411,776 - +0.8
411,781 - +0.4
411,784 + -2.1
411,785 - +1.2
411,788 - -0.1
411,789 - +0.2
411,795 + +1.4
411,795 - -1.1
411,799 + +0.7
411,799 + -0.0
411,801 - -0.5
411,802 - +0.8
411,802 - -1.3
411,815 - +0.4
411,822 - +0.5
411,826 + -0.4
411,831 + -0.0
411,876 + -1.5
411,932 - +0.6
411,948 - -0.7
411,955 + -0.2
411,959 - -0.2
411,959 + -0.4
411,979 + +1.3
411,980 + -0.4
411,985 - -0.1
411,987 + +1.0
411,989 + +0.0
412,064 + -0.2
412,097 + -0.2
412,097 - -0.5

Or see this region's nucleotide sequence