Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5592

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13959 and 13960 are separated by 255 nucleotides13960 and 13961 are separated by 63 nucleotides mRNA_5591: 13959 - K11182 AOC1, ABP1 diamine oxidase, at 458,129 to 461,343 13959 mRNA_5592: 13960 - HMMPfam-Alcohol acetyltransferase-PF07247,SUPERFAMILY--SSF52777, at 461,599 to 463,064 13960 mRNA_5593: 13961 - K00905 BCKDK [3-methyl-2-oxobutanoate dehydrogenase (acetyl-transferring)] kinase, at 463,128 to 464,888 13961

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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460,954 - 13959 mRNA_5591 0.88 +0.9
461,214 - +0.3
461,232 - +0.7
461,497 + -2.6
461,497 + -0.7
461,562 - +0.6
461,686 - -0.6
461,697 - -0.5
461,953 - 13960 mRNA_5592 0.24 -1.0
462,286 - 13960 mRNA_5592 0.47 +1.1
462,330 + 13960 mRNA_5592 0.50 -3.0
462,577 - 13960 mRNA_5592 0.67 -0.1
462,587 - 13960 mRNA_5592 0.67 -0.4
463,027 + +0.5
463,145 - +1.1
463,458 - 13961 mRNA_5593 0.19 -1.2
463,588 + 13961 mRNA_5593 0.26 -0.2
463,597 + 13961 mRNA_5593 0.27 -2.1
463,734 - 13961 mRNA_5593 0.34 -0.1
463,875 + 13961 mRNA_5593 0.42 +0.4
464,044 - 13961 mRNA_5593 0.52 -0.8
464,061 + 13961 mRNA_5593 0.53 +0.5

Or see this region's nucleotide sequence