Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5604

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13971 and 13972 are separated by 366 nucleotides13972 and 13973 are separated by 411 nucleotides mRNA_5603: 13971 - K09523 DNAJC3 DnaJ homolog subfamily C member 3, at 484,833 to 486,890 13971 mRNA_5604: 13972 - Hypothetical Protein, at 487,257 to 489,515 13972 mRNA_5605: 13973 - Hypothetical Protein, at 489,927 to 490,531 13973

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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486,656 - 13971 mRNA_5603 0.89 +0.2
486,690 + +0.6
486,690 + +2.1
486,692 + +0.6
486,817 + +1.0
487,062 - +1.1
487,103 - +0.5
487,698 + 13972 mRNA_5604 0.20 -0.3
487,733 - 13972 mRNA_5604 0.21 -0.9
487,903 - 13972 mRNA_5604 0.29 -0.1
488,149 - 13972 mRNA_5604 0.39 +0.5
488,520 - 13972 mRNA_5604 0.56 +0.6
488,806 + 13972 mRNA_5604 0.69 -0.7
489,484 - +0.4
489,814 + +0.2
489,951 + -1.2

Or see this region's nucleotide sequence