Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5609

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13976 and 13977 are separated by 369 nucleotides13977 and 13978 are separated by 88 nucleotides mRNA_5608: 13976 - K03018 RPC1, POLR3A DNA-directed RNA polymerase III subunit RPC1, at 494,885 to 501,857 13976 mRNA_5609: 13977 - HMMPfam-Leucine Rich Repeat-PF00560,ProSiteProfiles-Leucine-rich repeat profile.-PS51450,SMART-Leucine-rich repeats, typical (most populated) subfamily-SM00369,SUPERFAMILY--SSF52058, at 502,227 to 504,581 13977 mRNA_5610: 13978 - KOG1611 Predicted short chain-type dehydrogenase, at 504,670 to 507,396 13978

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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501,868 - +1.2
502,016 - +1.7
502,129 - +0.8
502,143 - -0.4
502,152 - -1.5
502,153 - +0.9
502,154 + +0.3
502,157 - +0.3
502,293 - -0.9
502,452 - +1.5
502,473 - 13977 mRNA_5609 0.10 +0.3
502,477 + 13977 mRNA_5609 0.11 -0.1
502,477 + 13977 mRNA_5609 0.11 +0.1
502,748 + 13977 mRNA_5609 0.22 -0.2
503,040 - 13977 mRNA_5609 0.35 -0.3
503,646 - 13977 mRNA_5609 0.60 -1.4
503,891 + 13977 mRNA_5609 0.71 +2.7
503,903 + 13977 mRNA_5609 0.71 +1.4
504,176 - 13977 mRNA_5609 0.83 +0.7
504,191 - 13977 mRNA_5609 0.83 -1.9
504,191 - 13977 mRNA_5609 0.83 +0.2
504,222 + 13977 mRNA_5609 0.85 +1.0
504,286 + 13977 mRNA_5609 0.87 +0.0
505,095 + 13978 mRNA_5610 0.16 +0.1
505,536 + 13978 mRNA_5610 0.32 +0.9

Or see this region's nucleotide sequence