Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5665

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14033 and 14034 are separated by 386 nucleotides mRNA_5665: 14033 - K15083 RAD16 DNA repair protein RAD16, at 634,205 to 636,873 14033 mRNA_5666: 14034 - Hypothetical Protein, at 637,260 to 638,584 14034

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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633,287 + +0.3
633,552 + +0.7
633,581 + -1.2
633,799 - +0.7
633,990 - +0.4
634,167 + +1.1
634,280 + +0.4
634,534 + 14033 mRNA_5665 0.12 +0.1
634,541 - 14033 mRNA_5665 0.13 -0.0
634,998 - 14033 mRNA_5665 0.30 -0.1
635,001 - 14033 mRNA_5665 0.30 +1.3
635,239 + 14033 mRNA_5665 0.39 +0.3
635,331 - 14033 mRNA_5665 0.42 -0.3
635,338 + 14033 mRNA_5665 0.42 -0.8
635,370 - 14033 mRNA_5665 0.44 +0.1
635,439 - 14033 mRNA_5665 0.46 +0.2
635,674 - 14033 mRNA_5665 0.55 -0.1
635,823 - 14033 mRNA_5665 0.61 +0.3
635,841 + 14033 mRNA_5665 0.61 -0.2
635,887 - 14033 mRNA_5665 0.63 +0.5
635,897 + 14033 mRNA_5665 0.63 +0.1
636,039 + 14033 mRNA_5665 0.69 -1.3
636,187 + 14033 mRNA_5665 0.74 -0.2
636,308 + 14033 mRNA_5665 0.79 -0.3
636,470 + 14033 mRNA_5665 0.85 -1.0
636,595 + 14033 mRNA_5665 0.90 +0.7
636,599 + 14033 mRNA_5665 0.90 -0.3
636,752 + -0.7
637,034 - -0.3
637,064 + -0.2
637,165 - -0.3
637,167 - -1.6
637,180 + +0.7
637,180 + +0.2
637,180 + +0.8
637,180 + +0.6
637,180 + -0.3
637,181 + -0.6
637,182 - +0.2
637,182 + -1.0
637,183 + -0.4
637,183 - +0.1
637,196 - +0.6
637,335 + -0.1
637,354 - +1.6
637,359 - -2.2
637,360 - -1.6
637,412 - 14034 mRNA_5666 0.11 +0.2
637,466 + 14034 mRNA_5666 0.16 -1.9
637,487 - 14034 mRNA_5666 0.17 -0.1
637,493 - 14034 mRNA_5666 0.18 -0.1
637,513 + 14034 mRNA_5666 0.19 +0.5
637,596 + 14034 mRNA_5666 0.25 +0.9
637,654 + 14034 mRNA_5666 0.30 +0.1

Or see this region's nucleotide sequence