Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5678

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14045 and 14046 are separated by 547 nucleotides14046 and 14047 are separated by 343 nucleotides mRNA_5677: 14045 - K15901 CGI121, TPRKB EKC/KEOPS complex subunit CGI121/TPRKB, at 672,495 to 673,304 14045 mRNA_5678: 14046 - K06005 SAP candidapepsin, at 673,852 to 675,422 14046 mRNA_5679: 14047 - KOG1944 Peroxisomal membrane protein MPV17 and related proteins, at 675,766 to 676,852 14047

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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672,887 + 14045 mRNA_5677 0.48 +0.1
672,891 - 14045 mRNA_5677 0.49 -0.2
672,896 + 14045 mRNA_5677 0.50 +2.1
672,903 - 14045 mRNA_5677 0.50 -1.0
672,910 + 14045 mRNA_5677 0.51 -0.1
673,040 + 14045 mRNA_5677 0.67 -0.9
673,049 - 14045 mRNA_5677 0.68 +0.5
673,050 + 14045 mRNA_5677 0.69 -0.9
673,051 - 14045 mRNA_5677 0.69 +1.5
673,072 - 14045 mRNA_5677 0.71 -2.0
673,347 + -1.0
673,458 - +1.2
673,493 + +0.9
673,628 - -0.6
673,631 - +0.9
673,645 + -0.9
673,651 - +1.1
673,657 - +0.4
673,661 + -2.0
673,662 + -1.0
673,670 + -0.7
673,673 - -0.0
673,678 + +1.1
673,680 - +1.9
673,680 + -3.1
673,680 - -0.1
673,684 + +0.2
673,703 - +0.3
673,707 + +0.0
673,709 + +0.3
673,710 + +0.3
673,721 + -0.0
673,740 - +0.2
673,796 - +0.2
673,797 + -0.5
673,798 + -0.1
673,831 + +0.2
673,861 - +0.1
673,890 + -3.1
673,911 + -1.7
673,911 + +0.1
674,048 + 14046 mRNA_5678 0.12 -2.6
674,221 - 14046 mRNA_5678 0.23 -0.2
674,351 - 14046 mRNA_5678 0.32 -0.2
674,354 + 14046 mRNA_5678 0.32 +1.4
674,360 - 14046 mRNA_5678 0.32 -0.5
674,461 + 14046 mRNA_5678 0.39 -0.1
674,811 - 14046 mRNA_5678 0.61 -0.9
674,817 - 14046 mRNA_5678 0.61 +0.5
674,818 + 14046 mRNA_5678 0.61 +1.3
675,042 + 14046 mRNA_5678 0.76 -0.0
675,095 + 14046 mRNA_5678 0.79 +0.8
675,215 - 14046 mRNA_5678 0.87 +0.7
675,492 + +0.4
675,542 + -0.6
675,585 - -0.3
675,654 + +1.0
676,395 + 14047 mRNA_5679 0.58 -0.3

Or see this region's nucleotide sequence