Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5696

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14063 and 14064 are separated by 356 nucleotides14064 and 14065 are separated by 296 nucleotides mRNA_5695: 14063 - K08869 ADCK, ABC1 aarF domain-containing kinase, at 708,061 to 710,208 14063 mRNA_5696: 14064 - K07152 SCO1_2 protein SCO1/2, at 710,565 to 711,827 14064 mRNA_5697: 14065 - K14568 EMG1, NEP1 rRNA small subunit pseudouridine methyltransferase Nep1, at 712,124 to 713,421 14065

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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709,766 + 14063 mRNA_5695 0.79 -1.6
710,123 - -0.8
710,457 - -0.3
711,766 + -1.1
711,900 + +1.0
711,904 + -0.8
711,905 - -0.8
711,920 + -0.5
711,941 - +2.2

Or see this region's nucleotide sequence