Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5717

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14084 and 14085 are separated by 312 nucleotides14085 and 14086 are separated by 146 nucleotides mRNA_5716: 14084 - Hypothetical Protein, at 759,003 to 760,646 14084 mRNA_5717: 14085 - K20524 LSB5 LAS seventeen-binding protein 5, at 760,959 to 763,265 14085 mRNA_5718: 14086 - SUPERFAMILY--SSF50370, at 763,412 to 765,448 14086

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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760,159 + 14084 mRNA_5716 0.70 -0.5
760,299 + 14084 mRNA_5716 0.79 +1.5
760,455 + 14084 mRNA_5716 0.88 +0.9
760,559 - +1.5
760,871 - -0.2
760,872 - +0.5
760,878 + -0.0
760,880 - -0.6
760,882 - -3.6
760,886 + -0.5
760,899 + -1.4
760,899 + +1.9
760,901 + -1.5
761,037 + +0.8
761,041 + -0.3
761,064 - -0.0
761,208 + 14085 mRNA_5717 0.11 +1.0
761,322 - 14085 mRNA_5717 0.16 -0.1
761,325 + 14085 mRNA_5717 0.16 -0.7
761,327 - 14085 mRNA_5717 0.16 -0.0
761,613 - 14085 mRNA_5717 0.28 +0.4
761,793 + 14085 mRNA_5717 0.36 -0.6
761,936 + 14085 mRNA_5717 0.42 +0.3
762,366 - 14085 mRNA_5717 0.61 -0.5
762,510 - 14085 mRNA_5717 0.67 -0.2
762,940 - 14085 mRNA_5717 0.86 +0.6
763,063 + -1.7
763,102 + +0.9
763,234 + -0.1
763,967 + 14086 mRNA_5718 0.27 -0.8
764,248 - 14086 mRNA_5718 0.41 +0.3
764,250 - 14086 mRNA_5718 0.41 +1.3

Or see this region's nucleotide sequence