Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5730

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14097 and 14098 are separated by 218 nucleotides mRNA_5729: 14097 - HMMPfam-MT-A70-PF05063,ProSiteProfiles-MT-A70-like family profile.-PS51143, at 789,135 to 790,820 14097 mRNA_5730: 14098 - SUPERFAMILY--SSF47113, at 791,039 to 793,394 14098

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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790,585 - 14097 mRNA_5729 0.86 +0.9
790,862 + +1.9
790,873 + +1.2
791,032 + -0.5
791,037 - -0.8
791,040 + -0.1
791,469 + 14098 mRNA_5730 0.18 +0.2
792,027 - 14098 mRNA_5730 0.42 +0.7
792,219 + 14098 mRNA_5730 0.50 +0.7
792,506 - 14098 mRNA_5730 0.62 -0.2
792,613 - 14098 mRNA_5730 0.67 +0.4
793,363 + -0.1

Or see this region's nucleotide sequence