Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5737

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14104 and 14105 are separated by 485 nucleotides14105 and 14106 are separated by 326 nucleotides mRNA_5736: 14104 - K03250 EIF3E, INT6 translation initiation factor 3 subunit E, at 812,074 to 813,868 14104 mRNA_5737: 14105 - HMMPfam-Arsenite-resistance protein 2-PF04959,ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157, at 814,354 to 815,055 14105 mRNA_5738: 14106 - SUPERFAMILY--SSF54928, at 815,382 to 817,330 14106

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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814,074 + +1.1
814,080 + -0.8
814,106 + +0.1
814,110 + +0.7
814,117 + +0.3
814,120 + +1.3
814,122 + -0.0
814,213 - -0.5
814,226 - -0.4
814,240 - +0.0
814,244 + -1.3
814,261 - -0.4
814,262 - -0.0
814,374 - -0.9
814,379 + -0.3
814,648 - 14105 mRNA_5737 0.42 -1.9
814,785 - 14105 mRNA_5737 0.61 -1.1
814,951 - 14105 mRNA_5737 0.85 -1.4
815,116 + +0.0
815,144 - -1.2
815,592 - 14106 mRNA_5738 0.11 -1.9

Or see this region's nucleotide sequence