Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5754

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14121 and 14122 are separated by 192 nucleotides mRNA_5753: 14121 - K17267 COPG coatomer subunit gamma, at 860,617 to 864,021 14121 mRNA_5754: 14122 - KOG1721 FOG Zn-finger, at 864,214 to 867,057 14122

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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864,013 - -0.3
864,202 - -0.5
864,954 + 14122 mRNA_5754 0.26 -3.5
865,084 - 14122 mRNA_5754 0.31 -1.9
865,215 + 14122 mRNA_5754 0.35 -0.8
865,988 + 14122 mRNA_5754 0.62 -2.8
866,081 - 14122 mRNA_5754 0.66 -0.7
866,245 - 14122 mRNA_5754 0.71 -0.6
866,252 + 14122 mRNA_5754 0.72 -0.2
866,334 + 14122 mRNA_5754 0.75 -1.8
866,845 - -2.1
866,970 + -0.5
866,980 + -0.6
867,005 - +1.7
867,133 + +0.4
867,164 - +0.1
867,270 - -1.3
867,301 + -0.8
867,309 + +0.9
867,310 - +0.6
867,319 - -0.5
867,324 + -0.3
867,431 - -0.5
867,454 - +2.1
867,491 - -1.0
867,505 + +0.0
867,510 - +0.4
867,518 + -0.7
867,619 - -0.3
867,630 - -3.1
867,634 + -0.3
867,635 - +0.1
867,636 - +0.1
867,637 - -0.9
867,638 + -1.2
867,641 + -0.0
867,645 + -0.1
867,647 - -0.9
867,648 - -0.5
867,650 + +1.9
867,651 - +0.3
867,653 - -0.9
867,653 - +0.1
867,655 - -0.2
867,655 - -1.7
867,656 - +0.4
867,657 + +0.3
867,662 + -0.5
867,663 + +0.3
867,663 - -3.0
867,663 + -1.6
867,663 + +0.4
867,664 - +0.7
867,664 + -0.6
867,667 - -0.4
867,668 + +0.8
867,670 + +0.9
867,671 + +0.3
867,674 + +0.0
867,675 - +0.9
867,678 + +0.6
867,691 - +1.2
867,713 + +0.4
867,722 + -0.3
867,727 - -0.2
867,731 + +0.5
867,741 - +0.5
867,741 - -0.6
867,742 + -1.7
867,742 + -0.7
867,745 + -1.1
867,746 + +0.6
867,749 + -0.2
867,750 - -1.4
867,762 - +0.7
867,766 - +0.9
867,769 + -0.4
867,880 + -2.7
867,906 + +0.7

Or see this region's nucleotide sequence