Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5760

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14127 and 14128 are separated by 154 nucleotides14128 and 14129 are separated by 290 nucleotides mRNA_5759: 14127 - K14769 UTP11 U3 small nucleolar RNA-associated protein 11, at 876,806 to 878,161 14127 mRNA_5760: 14128 - K14015 NPLOC4, NPL4 nuclear protein localization protein 4 homolog, at 878,316 to 881,175 14128 mRNA_5761: 14129 - K14997 SLC38A11 solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 11, at 881,466 to 883,589 14129

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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877,947 - 14127 mRNA_5759 0.84 +1.5
878,224 - +0.3
878,235 - -0.2
878,243 - +0.7
878,249 + -0.2
878,280 + +2.2
878,286 + -1.2
878,302 + -0.7
881,224 - +0.2
881,295 - +0.5
881,359 - -0.3
881,372 + +0.4
881,379 - -3.4
881,433 - +0.2
881,893 + 14129 mRNA_5761 0.20 +0.9
881,896 - 14129 mRNA_5761 0.20 -0.3
882,061 + 14129 mRNA_5761 0.28 +0.1
882,090 - 14129 mRNA_5761 0.29 -0.2

Or see this region's nucleotide sequence