Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5777

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14144 and 14145 are separated by 185 nucleotides14145 and 14146 are separated by 566 nucleotides mRNA_5776: 14144 - HMMPfam-Phosphatidylinositol-specific phospholipase C, X domain-PF00388,ProSiteProfiles-Phosphatidylinositol-specific phospholipase X-box domain profile.-PS50007,SUPERFAMILY--SSF51695, at 920,137 to 921,765 14144 mRNA_5777: 14145 - Hypothetical Protein, at 921,951 to 922,623 14145 mRNA_5778: 14146 - HMMPfam-bZIP transcription factor-PF00170,HMMPfam-Transcription factor PAP1-PF08601,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF111430,SUPERFAMILY--SSF57959, at 923,190 to 924,639 14146

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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920,987 - 14144 mRNA_5776 0.52 +0.7
921,239 - 14144 mRNA_5776 0.68 -0.4
921,747 - -2.3
921,782 - -0.7
921,917 + +0.1
922,035 + 14145 mRNA_5777 0.12 -0.8
922,192 - 14145 mRNA_5777 0.36 -0.3
922,364 + 14145 mRNA_5777 0.61 +0.3
922,366 + 14145 mRNA_5777 0.62 +1.0
922,378 - 14145 mRNA_5777 0.63 -0.5
922,487 + 14145 mRNA_5777 0.80 -0.4
922,770 - +2.4
922,786 - +2.4
922,787 - -0.3
922,793 + +0.0
922,794 - -0.2
922,802 + -1.1
922,811 + +1.0
922,822 + +0.0
922,985 + +0.2
923,012 + -1.1
923,126 - +0.2
923,139 + -0.3
923,139 + +1.8
923,431 + 14146 mRNA_5778 0.17 -1.2

Or see this region's nucleotide sequence