Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5841

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14208 and 14209 are separated by 230 nucleotides14209 and 14210 are separated by 109 nucleotides mRNA_5840: 14208 - Hypothetical Protein, at 1,060,161 to 1,062,503 14208 mRNA_5841: 14209 - KOG1577 Aldo/keto reductase family proteins, at 1,062,734 to 1,064,125 14209 mRNA_5842: 14210 - K04508 TBL1 transducin (beta)-like 1, at 1,064,235 to 1,067,284 14210

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,061,788 + 14208 mRNA_5840 0.69 +2.0
1,062,494 + +0.1
1,062,617 - +0.6
1,062,626 + -0.3
1,062,654 - +1.1
1,062,699 - +0.5
1,062,933 - 14209 mRNA_5841 0.14 -0.8
1,062,935 - 14209 mRNA_5841 0.14 +0.6
1,062,952 - 14209 mRNA_5841 0.16 +1.0
1,063,094 - 14209 mRNA_5841 0.26 +0.7
1,063,097 + 14209 mRNA_5841 0.26 -1.0
1,063,099 + 14209 mRNA_5841 0.26 -0.7
1,063,105 + 14209 mRNA_5841 0.27 +1.2
1,063,107 + 14209 mRNA_5841 0.27 -1.6
1,063,132 - 14209 mRNA_5841 0.29 +0.4
1,063,249 + 14209 mRNA_5841 0.37 +0.9
1,063,256 - 14209 mRNA_5841 0.38 -0.6
1,063,274 - 14209 mRNA_5841 0.39 +0.9
1,063,520 + 14209 mRNA_5841 0.56 +2.6
1,063,695 - 14209 mRNA_5841 0.69 -0.4
1,063,808 + 14209 mRNA_5841 0.77 +0.4
1,063,829 - 14209 mRNA_5841 0.79 +1.8
1,063,861 + 14209 mRNA_5841 0.81 +0.8
1,063,869 - 14209 mRNA_5841 0.82 -0.8
1,064,005 - +0.3
1,064,300 + -0.4
1,064,464 + -0.4
1,064,642 + 14210 mRNA_5842 0.13 -0.1
1,064,711 + 14210 mRNA_5842 0.16 +1.2
1,065,017 - 14210 mRNA_5842 0.26 -0.4

Or see this region's nucleotide sequence