Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5891

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14259 and 14260 are separated by 177 nucleotides14260 and 14261 are separated by 140 nucleotides mRNA_5891: 14259 - K11788 ADE5 phosphoribosylamine--glycine ligase / phosphoribosylformylglycinamidine cyclo-ligase, at 1,182,342 to 1,185,171 14259 mRNA_5892: 14260 - Hypothetical Protein, at 1,185,349 to 1,185,740 14260 mRNA_5893: 14261 - KOG1748 Acyl carrier protein/NADH-ubiquinone oxidoreductase, NDUFAB1/SDAP subunit, at 1,185,881 to 1,186,514 14261

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,181,353 - +0.2
1,181,354 - +0.1
1,181,360 - -1.3
1,181,361 + +0.0
1,181,364 + +0.0
1,181,364 + -0.4
1,181,368 + +1.1
1,181,369 - +0.3
1,181,373 - -0.1
1,181,373 + -1.6
1,181,376 + +2.4
1,181,376 + +0.1
1,181,377 + +0.4
1,181,379 + +0.4
1,181,384 + +0.9
1,181,386 + +0.7
1,181,556 - +0.3
1,181,571 - +1.2
1,181,574 + +1.8
1,181,694 + -0.6
1,181,960 - -1.5
1,181,978 + +0.0
1,182,006 + -1.3
1,182,123 + -0.3
1,182,131 + -0.3
1,182,136 - +1.3
1,182,286 - +0.6
1,182,449 + -2.6
1,182,762 + 14259 mRNA_5891 0.15 -4.2
1,182,769 - 14259 mRNA_5891 0.15 -1.8
1,183,774 + 14259 mRNA_5891 0.51 -0.6
1,185,527 + 14260 mRNA_5892 0.45 +0.4
1,185,545 - 14260 mRNA_5892 0.50 +0.2
1,185,649 - 14260 mRNA_5892 0.77 -0.7
1,185,664 - 14260 mRNA_5892 0.80 +1.3
1,185,811 - -0.5

Or see this region's nucleotide sequence