Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5896

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14263 and 14264 are separated by 201 nucleotides14264 and 14265 are separated by 104 nucleotides mRNA_5895: 14263 - K17255 GDI1_2 Rab GDP dissociation inhibitor, at 1,189,852 to 1,191,772 14263 mRNA_5896: 14264 - K07573 CSL4, EXOSC1 exosome complex component CSL4, at 1,191,974 to 1,192,832 14264 mRNA_5897: 14265 - Interpro Mitochondrial import receptor subunit or translocase, at 1,192,937 to 1,193,713 14265

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,191,870 + +0.4
1,191,871 + -1.0
1,191,871 - -0.2
1,192,300 + 14264 mRNA_5896 0.38 -1.2
1,192,306 - 14264 mRNA_5896 0.39 -0.7
1,192,740 - 14264 mRNA_5896 0.89 -0.3
1,192,867 + +0.0
1,192,871 - +0.4
1,192,881 + -1.1
1,192,898 - -0.7
1,192,898 + +0.3
1,192,900 - -0.4
1,192,909 - +1.1
1,192,923 + -0.4
1,193,168 - 14265 mRNA_5897 0.30 -0.2
1,193,356 - 14265 mRNA_5897 0.54 -0.6
1,193,588 - 14265 mRNA_5897 0.84 +1.5
1,193,800 - +1.3

Or see this region's nucleotide sequence