Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5946

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14313 and 14314 are separated by 295 nucleotides14314 and 14315 are separated by 139 nucleotides mRNA_5945: 14313 - Hypothetical Protein, at 1,295,302 to 1,296,454 14313 mRNA_5946: 14314 - Hypothetical Protein, at 1,296,750 to 1,297,889 14314 mRNA_5947: 14315 - KOG1001 Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily, at 1,298,029 to 1,303,055 14315

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,295,814 + 14313 mRNA_5945 0.44 -1.5
1,295,936 - 14313 mRNA_5945 0.55 -0.3
1,296,097 + 14313 mRNA_5945 0.69 -1.3
1,296,214 - 14313 mRNA_5945 0.79 +0.3
1,296,254 - 14313 mRNA_5945 0.83 -2.6
1,296,363 + +1.0
1,296,363 + -1.7
1,296,403 + -0.4
1,296,517 - +0.8
1,296,936 - 14314 mRNA_5946 0.16 -0.1
1,297,088 + 14314 mRNA_5946 0.30 +0.3
1,297,090 - 14314 mRNA_5946 0.30 +0.4
1,297,100 + 14314 mRNA_5946 0.31 +0.1
1,297,251 - 14314 mRNA_5946 0.44 -0.8
1,297,261 + 14314 mRNA_5946 0.45 +0.6
1,297,272 - 14314 mRNA_5946 0.46 +0.9
1,297,365 - 14314 mRNA_5946 0.54 -1.4
1,297,531 - 14314 mRNA_5946 0.69 +0.7
1,297,664 + 14314 mRNA_5946 0.80 +0.3
1,297,681 + 14314 mRNA_5946 0.82 +0.1
1,297,845 - +0.2
1,297,973 + +0.1
1,297,987 - +0.4
1,298,243 - -0.7
1,298,299 + +0.3
1,298,435 + +0.2
1,298,444 + +0.8

Or see this region's nucleotide sequence