Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5995

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14362 and 14363 are separated by 150 nucleotides14363 and 14364 are separated by 535 nucleotides mRNA_5994: 14362 - K14774 UTP25, DEF U3 small nucleolar RNA-associated protein 25, at 1,405,028 to 1,407,712 14362 mRNA_5995: 14363 - K14539 LSG1 large subunit GTPase 1, at 1,407,863 to 1,410,284 14363 mRNA_5996: 14364 - BLAST ran GTPase activating protein 1 [Capsaspora owcza..., at 1,410,820 to 1,412,089 14364

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,407,683 - -1.2
1,407,698 + -2.3
1,407,720 + +0.5
1,407,733 - +0.4
1,407,735 - +0.1
1,407,865 + -0.5
1,410,312 + -0.2
1,410,315 + +0.8
1,410,318 + -0.3
1,410,355 + -0.3
1,410,475 - -1.4
1,410,577 + +0.0
1,410,618 - -1.9
1,410,633 + -0.6
1,410,792 - -0.2
1,410,936 + -0.9
1,410,937 - -1.3
1,410,937 - -0.9
1,410,950 + 14364 mRNA_5996 0.10 +0.8
1,410,953 - 14364 mRNA_5996 0.10 +1.4
1,410,966 + 14364 mRNA_5996 0.11 -0.8

Or see this region's nucleotide sequence