Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6015

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14382 and 14383 are separated by 612 nucleotides14383 and 14384 are separated by 660 nucleotides mRNA_6014: 14382 - K14785 ESF2, ABT1 ESF2/ABP1 family protein, at 1,454,003 to 1,455,202 14382 mRNA_6015: 14383 - K12619 XRN2, RAT1 5'-3' exoribonuclease 2, at 1,455,815 to 1,459,518 14383 mRNA_6016: 14384 - Hypothetical Protein, at 1,460,179 to 1,461,527 14384

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,455,199 + -0.5
1,455,284 - -0.8
1,455,306 + -0.1
1,455,467 - -0.3
1,458,193 - 14383 mRNA_6015 0.64 +0.7
1,459,817 + +0.1
1,460,266 - -0.2
1,460,393 - 14384 mRNA_6016 0.16 +0.6
1,460,411 - 14384 mRNA_6016 0.17 -0.2
1,460,517 + 14384 mRNA_6016 0.25 -0.6

Or see this region's nucleotide sequence