Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6053

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14420 and 14421 are separated by 296 nucleotides14421 and 14422 are separated by 300 nucleotides mRNA_6052: 14420 - Hypothetical Protein, at 1,525,675 to 1,528,680 14420 mRNA_6053: 14421 - Hypothetical Protein, at 1,528,977 to 1,530,261 14421 mRNA_6054: 14422 - Hypothetical Protein, at 1,530,562 to 1,531,285 14422

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,527,984 + 14420 mRNA_6052 0.77 -1.1
1,527,991 - 14420 mRNA_6052 0.77 -0.5
1,528,215 + 14420 mRNA_6052 0.84 -1.2
1,528,322 + 14420 mRNA_6052 0.88 +0.8
1,528,454 - -0.7
1,528,745 + +0.5
1,528,901 - +0.1
1,528,909 + -0.2
1,528,930 - -0.6
1,528,930 - -2.1
1,528,931 - +0.2
1,529,034 - -1.8
1,529,059 + -1.6
1,529,143 + 14421 mRNA_6053 0.13 +0.1
1,529,143 - 14421 mRNA_6053 0.13 +0.3
1,529,143 + 14421 mRNA_6053 0.13 +0.3
1,529,166 - 14421 mRNA_6053 0.15 -0.2
1,529,180 + 14421 mRNA_6053 0.16 -2.3
1,529,184 + 14421 mRNA_6053 0.16 +0.1
1,529,308 - 14421 mRNA_6053 0.26 +0.6
1,529,316 - 14421 mRNA_6053 0.26 +1.2
1,529,334 + 14421 mRNA_6053 0.28 +0.2
1,529,464 - 14421 mRNA_6053 0.38 +0.2
1,529,568 - 14421 mRNA_6053 0.46 -0.5
1,529,652 + 14421 mRNA_6053 0.53 -1.5
1,529,769 + 14421 mRNA_6053 0.62 +0.0
1,529,773 - 14421 mRNA_6053 0.62 -0.4
1,529,900 - 14421 mRNA_6053 0.72 +0.0
1,529,905 - 14421 mRNA_6053 0.72 -0.2
1,529,909 - 14421 mRNA_6053 0.73 +2.2
1,529,940 - 14421 mRNA_6053 0.75 +0.6
1,529,945 + 14421 mRNA_6053 0.75 +1.0
1,529,982 - 14421 mRNA_6053 0.78 +1.1
1,530,038 - 14421 mRNA_6053 0.83 -1.9
1,530,080 - 14421 mRNA_6053 0.86 +0.8
1,530,157 - +2.4
1,530,162 + +1.4
1,530,173 - +0.2
1,530,199 - -0.6
1,530,200 - +0.3
1,530,203 - -0.3
1,530,323 - -0.7
1,530,336 + -0.5
1,530,341 + -0.6
1,530,347 - -0.6
1,530,630 + +0.5
1,530,639 - 14422 mRNA_6054 0.11 -1.6
1,530,649 - 14422 mRNA_6054 0.12 +1.6
1,530,666 + 14422 mRNA_6054 0.14 -0.6
1,530,757 - 14422 mRNA_6054 0.27 +0.1
1,530,777 - 14422 mRNA_6054 0.30 -0.4
1,530,923 - 14422 mRNA_6054 0.50 +1.1
1,530,980 - 14422 mRNA_6054 0.58 +0.3
1,531,033 - 14422 mRNA_6054 0.65 -1.0
1,531,040 + 14422 mRNA_6054 0.66 -0.4
1,531,056 + 14422 mRNA_6054 0.68 +0.9
1,531,111 + 14422 mRNA_6054 0.76 +0.3
1,531,118 + 14422 mRNA_6054 0.77 +0.2
1,531,216 + +0.3
1,531,239 + +0.3
1,531,248 - -0.7

Or see this region's nucleotide sequence