Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6108

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14475 and 14476 are separated by 226 nucleotides mRNA_6107: 14475 - K14401 CPSF1, CFT1 cleavage and polyadenylation specificity factor subunit 1, at 3,990 to 10,005 14475 mRNA_6108: 14476 - Hypothetical Protein, at 10,232 to 11,111 14476

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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10,606 - 14476 mRNA_6108 0.42 +1.6
10,729 - 14476 mRNA_6108 0.56 -1.0
10,746 - 14476 mRNA_6108 0.58 -1.0
10,784 - 14476 mRNA_6108 0.63 -0.6
10,913 - 14476 mRNA_6108 0.77 -1.3
11,005 + 14476 mRNA_6108 0.88 -1.4
11,235 - +0.6
11,402 + -0.5
11,634 - +0.1
12,059 + +1.4

Or see this region's nucleotide sequence