Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6199

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14566 and 14567 are separated by 229 nucleotides14567 and 14568 are separated by 405 nucleotides mRNA_6198: 14566 - BLAST tyrosine kinase domain protein [Rhizoctonia solani AG..., at 229,572 to 230,681 14566 mRNA_6199: 14567 - HMMPfam-Phosphotransferase enzyme family-PF01636,SUPERFAMILY--SSF56112, at 230,911 to 232,731 14567 mRNA_6200: 14568 - Hypothetical Protein, at 233,137 to 235,524 14568

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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230,266 + 14566 mRNA_6198 0.63 +0.1
230,345 + 14566 mRNA_6198 0.70 -0.2
230,751 + +0.3
231,043 - -2.8
231,085 - -2.6
231,125 + 14567 mRNA_6199 0.12 -1.3
231,212 - 14567 mRNA_6199 0.17 -1.4
231,310 - 14567 mRNA_6199 0.22 -3.1
231,435 - 14567 mRNA_6199 0.29 -2.2
231,605 + 14567 mRNA_6199 0.38 +0.3
231,896 - 14567 mRNA_6199 0.54 -1.2
231,915 - 14567 mRNA_6199 0.55 -1.1
231,922 + 14567 mRNA_6199 0.56 -1.4
232,008 - 14567 mRNA_6199 0.60 -3.8
232,202 - 14567 mRNA_6199 0.71 -1.9
232,335 - 14567 mRNA_6199 0.78 -2.8
232,458 - 14567 mRNA_6199 0.85 -3.6
232,469 - 14567 mRNA_6199 0.86 -2.3
232,478 - 14567 mRNA_6199 0.86 -1.8
232,509 - 14567 mRNA_6199 0.88 -2.5
232,514 - 14567 mRNA_6199 0.88 -0.0
232,597 - -3.7
232,618 + -1.1
232,626 - -0.7
232,637 + -2.3
232,643 - -2.9
232,657 + -1.8
232,783 - +0.9
232,815 + -0.1
232,821 + +0.0
232,953 - -1.1
233,105 - -0.2

Or see this region's nucleotide sequence