Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6213

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14580 and 14581 are separated by 115 nucleotides14581 and 14582 are separated by 718 nucleotides mRNA_6212: 14580 - SMART-Domain with 2 conserved Trp (W) residues-SM00456,SUPERFAMILY--SSF51045, at 263,965 to 264,991 14580 mRNA_6213: 14581 - KOG2318 Uncharacterized conserved protein, at 265,107 to 268,005 14581 mRNA_6214: 14582 - K11684 BDF1 bromodomain-containing factor 1, at 268,724 to 272,351 14582

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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264,549 + 14580 mRNA_6212 0.57 +0.5
264,801 + 14580 mRNA_6212 0.81 -1.3
264,853 + 14580 mRNA_6212 0.86 -0.0
264,994 - +0.2
265,107 + +0.5
265,257 + +0.5
266,264 - 14581 mRNA_6213 0.40 -0.8
268,060 - -0.2
268,080 + -0.8
268,082 - +0.4
268,088 + -0.8
268,247 - -0.3
268,533 - +0.0
268,664 + +0.5

Or see this region's nucleotide sequence