Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6226

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14594 and 14595 are separated by 966 nucleotides mRNA_6226: 14594 - Hypothetical Protein, at 297,535 to 298,697 14594 mRNA_6227: 14595 - BLAST DEAD box helicase [Trichophyton violaceum], at 299,664 to 299,897 14595

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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296,569 + -0.8
296,579 + +0.3
296,587 - +0.7
296,595 - -0.5
296,604 - -0.8
296,604 + +0.3
296,617 + +0.7
296,624 - -0.5
296,713 + -1.2
296,738 - -0.4
296,752 - -1.4
297,301 + -0.3
297,345 + +0.5
297,739 + 14594 mRNA_6226 0.18 +1.8
297,750 + 14594 mRNA_6226 0.18 -0.4
297,778 + 14594 mRNA_6226 0.21 -1.0
297,778 - 14594 mRNA_6226 0.21 -0.8
298,489 + 14594 mRNA_6226 0.82 -0.2
298,626 - +0.6
298,640 - -0.2
298,664 + +0.3
298,755 + -0.1
298,756 - +0.4
298,757 + -0.6
298,764 + +1.4
298,953 + -0.2
299,024 + -0.3
299,095 - -0.5
299,099 - +0.3
299,105 + +0.1
299,105 - -1.1
299,106 + +1.6
299,147 - +0.9
299,151 + +1.8
299,159 - +0.4
299,160 + -0.8
299,205 + +0.2
299,207 - +2.3
299,230 + -0.8

Or see this region's nucleotide sequence