Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6238

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14605 and 14606 are separated by 589 nucleotides mRNA_6237: 14605 - K20061 ALY1_2, ART3_6 arrestin-related trafficking adapter 3/6, at 321,480 to 324,944 14605 mRNA_6238: 14606 - K13205 AAR2, C20orf4 A1 cistron-splicing factor AAR2, at 325,534 to 327,076 14606

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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324,552 + 14605 mRNA_6237 0.89 -0.5
324,968 + +0.1
324,991 - +2.0
325,002 - -1.2
325,127 - +0.2
325,159 + +0.2
325,292 - -0.1
325,297 + +0.0
325,308 + +1.6
325,424 - +0.3
325,441 - +1.1
325,448 - +0.7
325,460 - +2.8
325,462 - -0.1
325,463 + -0.2
325,470 + +1.3
325,473 - +0.1
325,481 + +0.3
325,495 + -0.4
325,533 - +0.6
325,556 - +1.2
325,574 + -0.2
325,598 + +1.4
326,203 + 14606 mRNA_6238 0.43 -0.5
326,214 - 14606 mRNA_6238 0.44 +1.4
326,486 - 14606 mRNA_6238 0.62 -1.2
326,503 + 14606 mRNA_6238 0.63 +0.2
326,505 - 14606 mRNA_6238 0.63 +0.6
326,775 + 14606 mRNA_6238 0.80 -1.8
326,778 - 14606 mRNA_6238 0.81 -1.6
326,802 + 14606 mRNA_6238 0.82 +0.9
326,931 + +0.1
326,941 - +0.2
326,951 + +0.4
326,952 + +0.4
327,025 + +0.2
327,069 - +0.6
327,072 - -0.3
327,103 - -0.2
327,118 + +0.6
327,367 - -0.2
327,412 + +0.3
327,530 - -1.4
327,539 + +0.1
327,547 - -0.5
327,550 + +0.1
327,553 - +0.4
327,564 - -0.9
327,703 + -0.6
327,779 - -0.1
327,808 - +0.9
327,810 + -0.9
327,821 + -0.6
327,825 + +0.4
327,837 + +2.7
327,854 - -0.5
327,862 + -0.5
327,862 + -0.2
327,881 + +0.7
327,986 - +1.5
328,015 + -1.1
328,020 - +0.7

Or see this region's nucleotide sequence