Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6295

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14662 and 14663 are separated by 629 nucleotides14663 and 14664 are separated by 306 nucleotides mRNA_6294: 14662 - K00928 lysC aspartate kinase, at 460,272 to 462,518 14662 mRNA_6295: 14663 - K11593 ELF2C, AGO eukaryotic translation initiation factor 2C, at 463,148 to 466,558 14663 mRNA_6296: 14664 - Hypothetical Protein, at 466,865 to 468,121 14664

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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462,727 + -0.1
463,164 + -2.3
463,512 - 14663 mRNA_6295 0.11 +1.3
464,080 + 14663 mRNA_6295 0.27 -1.0
464,100 + 14663 mRNA_6295 0.28 +0.3
464,101 + 14663 mRNA_6295 0.28 -1.5
464,918 + 14663 mRNA_6295 0.52 -1.4
465,403 - 14663 mRNA_6295 0.66 -2.5
465,583 - 14663 mRNA_6295 0.71 +0.9
466,277 - -0.3
466,337 - -1.7
467,192 - 14664 mRNA_6296 0.26 +1.1
467,363 - 14664 mRNA_6296 0.40 +1.3
467,506 + 14664 mRNA_6296 0.51 +0.0
467,511 - 14664 mRNA_6296 0.51 +0.9

Or see this region's nucleotide sequence