Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6316

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14683 and 14684 are separated by 243 nucleotides14684 and 14685 are separated by 338 nucleotides mRNA_6315: 14683 - K10609 CUL4 cullin 4, at 528,215 to 531,333 14683 mRNA_6316: 14684 - Hypothetical Protein, at 531,577 to 532,542 14684 mRNA_6317: 14685 - K11649 SMARCC SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C, at 532,881 to 534,866 14685

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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530,730 - 14683 mRNA_6315 0.81 -4.3
530,884 + 14683 mRNA_6315 0.86 +0.6
531,001 - 14683 mRNA_6315 0.89 -0.3
531,177 + +0.4
531,297 - -0.5
531,300 + -0.1
531,315 + +2.5
531,465 + -0.0
531,465 + +0.6
531,466 + -1.3
531,466 + +0.3
531,474 + +0.3
531,482 + +0.7
531,483 - +0.7
531,495 - +0.4
531,637 + -0.1
531,654 + +0.5
531,655 - -0.1
531,775 - 14684 mRNA_6316 0.20 -0.1
531,804 - 14684 mRNA_6316 0.23 -0.4
531,811 + 14684 mRNA_6316 0.24 -0.9
531,819 + 14684 mRNA_6316 0.25 -0.1
531,943 - 14684 mRNA_6316 0.38 +0.4
531,949 - 14684 mRNA_6316 0.39 -0.4
531,965 + 14684 mRNA_6316 0.40 +2.1
531,979 + 14684 mRNA_6316 0.42 +0.8
531,985 + 14684 mRNA_6316 0.42 +0.2
531,986 + 14684 mRNA_6316 0.42 +1.2
532,074 + 14684 mRNA_6316 0.51 -0.4
532,091 + 14684 mRNA_6316 0.53 +0.8
532,101 + 14684 mRNA_6316 0.54 -0.6
532,104 - 14684 mRNA_6316 0.55 +0.7
532,105 - 14684 mRNA_6316 0.55 +0.7
532,108 - 14684 mRNA_6316 0.55 -1.0
532,109 + 14684 mRNA_6316 0.55 +1.7
532,121 + 14684 mRNA_6316 0.56 +2.2
532,126 - 14684 mRNA_6316 0.57 -0.2
532,129 + 14684 mRNA_6316 0.57 -1.1
532,172 + 14684 mRNA_6316 0.62 -0.5
532,240 - 14684 mRNA_6316 0.69 +0.8
532,251 - 14684 mRNA_6316 0.70 +0.4
532,251 - 14684 mRNA_6316 0.70 +0.7
532,288 + 14684 mRNA_6316 0.74 +1.3
532,731 - -0.1
532,740 + -0.1
532,873 - +0.5
532,878 - +1.3
532,893 + +0.7

Or see this region's nucleotide sequence