Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6326

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14693 and 14694 are separated by 248 nucleotides14694 and 14695 are separated by 154 nucleotides mRNA_6325: 14693 - Hypothetical Protein, at 552,273 to 554,258 14693 mRNA_6326: 14694 - BLAST secreted protein [Melampsora larici-populina 98AG31], at 554,507 to 555,774 14694 mRNA_6327: 14695 - K13124 MORG1 mitogen-activated protein kinase organizer 1, at 555,929 to 557,274 14695

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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553,522 - 14693 mRNA_6325 0.63 +0.9
553,545 - 14693 mRNA_6325 0.64 -0.5
553,546 + 14693 mRNA_6325 0.64 -0.0
553,546 + 14693 mRNA_6325 0.64 -1.3
553,546 - 14693 mRNA_6325 0.64 -0.6
553,548 - 14693 mRNA_6325 0.64 +2.2
553,560 + 14693 mRNA_6325 0.65 +2.3
553,582 + 14693 mRNA_6325 0.66 -0.8
553,587 - 14693 mRNA_6325 0.66 -0.4
553,592 - 14693 mRNA_6325 0.66 +0.3
553,595 - 14693 mRNA_6325 0.67 -1.4
553,614 - 14693 mRNA_6325 0.68 -1.0
553,623 + 14693 mRNA_6325 0.68 -0.0
553,623 + 14693 mRNA_6325 0.68 +0.1
553,629 - 14693 mRNA_6325 0.68 +0.7
553,632 + 14693 mRNA_6325 0.68 -0.2
553,634 - 14693 mRNA_6325 0.69 -0.4
553,647 - 14693 mRNA_6325 0.69 -0.6
553,652 + 14693 mRNA_6325 0.69 +2.0
553,653 + 14693 mRNA_6325 0.69 -0.3
553,657 + 14693 mRNA_6325 0.70 +1.3
553,661 + 14693 mRNA_6325 0.70 -0.7
553,670 + 14693 mRNA_6325 0.70 +1.3
553,673 - 14693 mRNA_6325 0.70 +0.1
553,673 + 14693 mRNA_6325 0.70 +0.5
553,687 + 14693 mRNA_6325 0.71 -0.6
553,711 + 14693 mRNA_6325 0.72 -0.2
553,728 + 14693 mRNA_6325 0.73 +1.6
553,730 + 14693 mRNA_6325 0.73 +1.1
553,740 + 14693 mRNA_6325 0.74 +1.2
553,762 + 14693 mRNA_6325 0.75 +2.9
553,768 - 14693 mRNA_6325 0.75 +2.1
553,774 - 14693 mRNA_6325 0.76 +1.3
553,778 + 14693 mRNA_6325 0.76 +0.3
553,779 - 14693 mRNA_6325 0.76 +0.7
553,785 - 14693 mRNA_6325 0.76 +0.1
553,786 + 14693 mRNA_6325 0.76 -1.3
553,786 + 14693 mRNA_6325 0.76 -0.1
553,791 + 14693 mRNA_6325 0.76 -0.9
553,851 - 14693 mRNA_6325 0.79 +0.4
553,866 - 14693 mRNA_6325 0.80 -1.2
553,878 - 14693 mRNA_6325 0.81 -0.4
553,895 - 14693 mRNA_6325 0.82 -0.2
553,923 + 14693 mRNA_6325 0.83 +0.1
553,934 - 14693 mRNA_6325 0.84 -1.1
553,945 - 14693 mRNA_6325 0.84 +0.2
553,963 - 14693 mRNA_6325 0.85 -1.0
553,978 + 14693 mRNA_6325 0.86 +0.6
554,030 + 14693 mRNA_6325 0.88 -0.4
554,050 + 14693 mRNA_6325 0.89 +0.9
554,055 - 14693 mRNA_6325 0.90 +0.9
554,061 + -0.6
554,072 + +0.1
554,080 + +1.3
554,087 - -2.1
554,105 + -1.8
554,211 + +0.3
554,306 + +0.5
554,331 + +0.2
554,350 - +0.4
554,368 - -1.8
554,369 + +0.8
554,378 + +3.4
554,494 - +1.3
554,502 - -0.7
554,511 + +0.6
554,517 - +0.5
555,351 + 14694 mRNA_6326 0.67 +0.3
555,364 - 14694 mRNA_6326 0.68 -0.9
555,668 + -0.0
555,679 - -0.2
555,813 + +1.9
555,827 + +0.8
555,844 + +0.7
555,855 - -1.0
555,878 + +0.3
556,083 + 14695 mRNA_6327 0.11 -1.0
556,095 - 14695 mRNA_6327 0.12 +0.7
556,380 + 14695 mRNA_6327 0.34 -0.7
556,687 + 14695 mRNA_6327 0.56 -0.2

Or see this region's nucleotide sequence