Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6370

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14738 and 14739 are separated by 454 nucleotides mRNA_6370: 14738 - K15692 RNF13, RZF E3 ubiquitin-protein ligase RNF13, at 655,960 to 658,637 14738 mRNA_6371: 14739 - HMMPfam-SET domain-PF00856,ProSiteProfiles-SET domain profile.-PS50280,SUPERFAMILY--SSF82199, at 659,092 to 660,021 14739

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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655,206 - +1.3
655,229 - -0.1
655,336 - -0.3
655,367 + +0.0
655,372 - +0.1
655,382 + +2.5
655,506 - +0.1
655,638 - +0.3
655,650 - +0.3
655,672 + +0.9
655,690 + +0.0
655,832 - -0.5
655,833 - +0.6
655,841 + +0.4
655,849 + +0.3
655,943 - +0.5
655,966 - -0.1
655,978 + -0.5
656,247 + 14738 mRNA_6370 0.11 -0.8
656,849 - 14738 mRNA_6370 0.33 +0.6
656,858 + 14738 mRNA_6370 0.34 +0.1
657,090 + 14738 mRNA_6370 0.42 +0.4
657,567 + 14738 mRNA_6370 0.60 +1.0
657,971 - 14738 mRNA_6370 0.75 +1.4
657,992 - 14738 mRNA_6370 0.76 +0.6
658,575 - +1.7
658,598 + +0.0
658,603 + +0.3
658,723 - +0.6
658,728 + -0.3
658,872 - -0.0
658,888 + -0.2
658,889 + +2.2
658,897 - -0.3
658,898 - -0.8
658,900 + -2.9
658,907 - -0.5
658,914 + -1.1
658,915 - +0.7
658,916 + +0.5
658,921 + +0.7
658,930 + +1.4
658,950 - -0.3
659,031 - -3.3
659,044 - -3.1
659,187 + 14739 mRNA_6371 0.10 +0.8
659,346 - 14739 mRNA_6371 0.27 +0.9

Or see this region's nucleotide sequence