Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6383

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14750 and 14751 are separated by 440 nucleotides14751 and 14752 are separated by 291 nucleotides mRNA_6382: 14750 - Hypothetical Protein, at 682,281 to 684,206 14750 mRNA_6383: 14751 - Hypothetical Protein, at 684,647 to 685,455 14751 mRNA_6384: 14752 - K13201 TIA1, TIAL1 nucleolysin TIA-1/TIAR, at 685,747 to 687,315 14752

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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683,814 + 14750 mRNA_6382 0.80 -0.1
683,821 + 14750 mRNA_6382 0.80 -0.9
684,126 + -0.8
684,530 - +1.2
684,678 + +0.2
685,130 + 14751 mRNA_6383 0.60 -1.7
685,554 - +0.7
685,554 - -0.0
685,560 + -1.0
685,563 - -0.4
685,570 - +0.7
685,582 + -0.2
685,588 - +0.1
685,594 + -0.6

Or see this region's nucleotide sequence