Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6385

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14752 and 14753 are separated by 430 nucleotides14753 and 14754 are separated by 540 nucleotides mRNA_6384: 14752 - K13201 TIA1, TIAL1 nucleolysin TIA-1/TIAR, at 685,747 to 687,315 14752 mRNA_6385: 14753 - K03107 SRP68 signal recognition particle subunit SRP68, at 687,746 to 690,070 14753 mRNA_6386: 14754 - KOG3043 Predicted hydrolase related to dienelactone hydrolase, at 690,611 to 691,768 14754

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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687,312 + +0.0
687,315 - -2.3
687,632 - +0.6
687,667 - -0.3
687,747 - -0.1
687,774 - +0.0
688,075 + 14753 mRNA_6385 0.14 +1.5
689,813 - 14753 mRNA_6385 0.89 -1.8
690,117 - +0.1
690,117 - -2.1
690,117 - -0.6
690,117 - +0.5
690,125 + +1.1
690,128 - +1.2
690,130 - +0.5
690,161 + +1.3
690,418 - +0.1
690,419 - +0.5
690,439 + +0.9
690,493 + +0.8
690,853 + 14754 mRNA_6386 0.21 -0.9
690,861 + 14754 mRNA_6386 0.22 +0.9

Or see this region's nucleotide sequence