Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6400

Experiment: YNB Methylricinoleic Acid

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14767 and 14768 are separated by 423 nucleotides mRNA_6399: 14767 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,SUPERFAMILY--SSF57959, at 724,341 to 725,780 14767 mRNA_6400: 14768 - K15720 N4BP2 NEDD4-binding protein 2, at 726,204 to 728,180 14768

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
remove
725,375 + 14767 mRNA_6399 0.72 +1.7
725,812 - -1.1
725,814 - -0.1
725,824 + +1.4
725,830 + -1.6
725,835 - -1.4
725,839 - -0.2
725,978 - -0.0
725,980 - +2.3
726,005 - -0.1
726,013 + -0.5
726,068 - +0.3
726,069 - +0.9
726,095 + +0.6
726,232 - +1.4
726,244 + -0.2
726,386 + +2.2
726,397 + +0.2
726,706 + 14768 mRNA_6400 0.25 +1.1
726,924 + 14768 mRNA_6400 0.36 +1.5
726,962 - 14768 mRNA_6400 0.38 -0.5
727,290 + 14768 mRNA_6400 0.55 +2.1
727,405 + 14768 mRNA_6400 0.61 -0.6
728,018 + -0.3
728,151 + +0.6
728,334 - -0.1

Or see this region's nucleotide sequence